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Libri Lab – Sen1 is a key regulator of transcription-driven conflicts

Congratulations to the Libri Lab for this new paper published in Molecular Cell! Sen1 is a key regulator of transcription-driven conflicts   Summary Cellular homeostasis requires the coordination of several machineries concurrently engaged in the DNA. Wide-spread transcription can interfere with other processes, and transcription-replication conflicts (TRCs) threaten genome stability. The conserved Sen1 helicase not only terminates non-coding transcription…

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Camadro Lab – AutoClassWeb: a simple web interface for Bayesian clustering of omics data

Pierre Poulain and Jean-Michel Camadro have just published in BMC Research Notes an article on an online tool they have developed (AutoClassWeb), which provides a simple and easy-to-use web interface for Bayesian clustering with AutoClass :   AutoClassWeb: a simple web interface for Bayesian clustering of omics data Abstract Objective: Data clustering is a common exploration step…

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Collignon Lab – Dissecting signaling hierarchies in the patterning of the mouse primitive streak using micropatterned EpiLC colonies

Congratulations to the Collignon Team for this new paper just published in Stem Cell Reports! Dissecting signaling hierarchies in the patterning of the mouse primitive streak using micropatterned EpiLC colonies Summary Embryo studies have established that the patterning of the mouse gastrula depends on a regulatory network in which the WNT, BMP, and NODAL signaling pathways cooperate,…

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Romet-Lemonne / Jégou Lab: Using Microfluidics and Fluorescence Microscopy to Study the Assembly Dynamics of Single Actin Filaments and Bundles

Congratulations to Romet-Lemonne / Jégou Team for this new paper just published in JoVE: Using Microfluidics and Fluorescence Microscopy to Study the Assembly Dynamics of Single Actin Filaments and Bundles Abstract In order to decipher the complex molecular mechanisms that regulate the assembly and disassembly of actin filaments, it is a great asset to monitor individual…

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Ribes Lab – Divergent transcriptional and transforming properties of PAX3-FOXO1 and PAX7-FOXO1 paralogs

Congratulations to the Ribes Team for this new paper just published in PLOS Genetics!   Divergent transcriptional and transforming properties of PAX3-FOXO1 and PAX7-FOXO1 paralogs   Abstract The hallmarks of the alveolar subclass of rhabdomyosarcoma are chromosomal translocations that generate chimeric PAX3-FOXO1 or PAX7-FOXO1 transcription factors. Overexpression of either PAX-FOXO1s results in related cell transformation in animal models. Yet,…

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Libri Lab: A Modified Cross-Linking Analysis of cDNAs (CRAC) Protocol for Detecting RNA–Protein Interactions and Transcription at Single-Nucleotide Resolution

Just published in Yeast Functional Genomics  pp 35-55 A Modified Cross-Linking Analysis of cDNAs (CRAC) Protocol for Detecting RNA–Protein Interactions and Transcription at Single-Nucleotide Resolution by: Drice Challal Jessie Colin Tommaso Villa Domenico Libri   Abstract Detecting protein–RNA interactions in vivo is essential for deciphering many important cellular pathways. Several methods…

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Camadro Lab / ProtéoSeine: Quantitative Proteomics in Yeast : From bSLIM and Proteome Discoverer Outputs to Graphical Assessment of the Significance of Protein Quantification Scores

Just publisehd in Yeast Functional Genomics  pp 275-292   Quantitative Proteomics in Yeast : From bSLIM and Proteome Discoverer Outputs to Graphical Assessment of the Significance of Protein Quantification Scores By Nicolas Sénécaut Pierre Poulain Laurent Lignières Samuel Terrier Véronique Legros Guillaume Chevreux Gaëlle Lelandais Jean-Michel Camadro

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Pintard Lab: The kiss of life: Aurora A embraces the phosphate of its cofactor Bora to trigger mitotic entry

A new paper published dans médecine/sciences par l'équipe Pintard : The kiss of life: Aurora A embraces the phosphate of its cofactor Bora to trigger mitotic entry   La plupart des organismes vivants pluricellulaires sont constitués d’un grand nombre de cellules très différentes. À l’exception des gamètes, qui sont le produit d’une division cellulaire particulière (méiose), toutes…

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Duharcourt Lab – Paramecium Polycomb repressive complex 2 physically interacts with the small RNA-binding PIWI protein to repress transposable elements

A new paper published by Duharcourt Team in Developmental Cell! Paramecium Polycomb repressive complex 2 physically interacts with the small RNA-binding PIWI protein to repress transposable elements   Summary Polycomb repressive complex 2 (PRC2) maintains transcriptionally silent genes in a repressed state via deposition of histone H3K27-trimethyl (me3) marks. PRC2 has also been implicated in silencing transposable elements (TEs), yet how PRC2…

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