Épigénome et paléogénome
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Publications récentes significatives
Pruvost, M., T. Grange and E. M. Geigl (2005). "Minimizing DNA contamination by using UNG-coupled quantitative real-time PCR on degraded DNA samples: application to ancient DNA studies." Biotechniques 38(4): 569-75.
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Thomassin, H., C. Kress and T. Grange (2004). "MethylQuant: a sensitive method for quantifying methylation of specific cytosines within the genome." Nucleic Acids Res 32(21).
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Flavin, M., L. Cappabianca, C. Kress, H. Thomassin and T. Grange (2004). "Nature of the accessible chromatin at a glucocorticoid-responsive enhancer." Mol Cell Biol 24(18): 7891-901.
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Pruvost, M. and E. M. Geigl (2004). "Real-time quantitative PCR to assess the authenticity of ancient DNA amplification." J. Archaeol. Sci. 31(9): 1191-1197.
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Couttet, P. and T. Grange (2004). "Premature termination codons enhance mRNA decapping in human cells." Nucleic Acids Res 32(2): 488-94. Print 2004.
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Grange, T., L. Cappabianca, M. Flavin, H. Sassi and H. Thomassin (2001). "In vivo analysis of the model tyrosine aminotransferase gene reveals multiple sequential steps in glucocorticoid receptor action." Oncogene 20(24): 3028-38.
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Thomassin, H., M. Flavin, M. L. Espinas and T. Grange (2001). "Glucocorticoid-induced DNA demethylation and gene memory during development." Embo J 20(8): 1974-83.
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Geigl, E.-M. (2002) "On the Circumstances Surrounding the Preservation and Analysis of Very Old DNA". Archaeometry 44 (3) :337-342,
Geigl, E. M. (2001). "Inadequate use of molecular hybridization to analyze DNA in Neanderthal fossils." Am J Hum Genet 68(1): 287-91.
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Christoffels, V. M., H. Sassi, J. M. Ruijter, A. F. Moorman, T. Grange and W. H. Lamers (1999). "A mechanistic model for the development and maintenance of portocentral gradients in gene expression in the liver." Hepatology 29(4): 1180-92.
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Sassi, H., R. Pictet and T. Grange (1998). "Glucocorticoids are insufficient for neonatal gene induction in the liver." Proc Natl Acad Sci U S A 95(10): 5621-5.
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Couttet, P., M. Fromont-Racine, D. Steel, R. Pictet and T. Grange (1997). "Messenger RNA deadenylylation precedes decapping in mammalian cells." Proc Natl Acad Sci U S A 94(11): 5628-33.
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Publications Thierry Grange
Grange, T., J. Imbert and D. Thieffry (2005). "Epigenomics: large scale analysis of chromatin modifications and transcription factors/genome interactions." Bioessays 27(11): 1203-5.
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Pruvost, M., T. Grange and E. M. Geigl (2005). "Minimizing DNA contamination by using UNG-coupled quantitative real-time PCR on degraded DNA samples: application to ancient DNA studies." Biotechniques 38(4): 569-75.
abstract
Couttet, P. and T. Grange (2004). "Premature termination codons enhance mRNA decapping in human cells." Nucleic Acids Res 32(2): 488-94. Print 2004.
abstract
Flavin, M., L. Cappabianca, C. Kress, H. Thomassin and T. Grange (2004). "Nature of the accessible chromatin at a glucocorticoid-responsive enhancer." Mol Cell Biol 24(18): 7891-901.
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Thakur, N., V. K. Tiwari, H. Thomassin, R. R. Pandey, M. Kanduri, A. Gondor, T. Grange, R. Ohlsson and C. Kanduri (2004). "An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region." Mol Cell Biol 24(18): 7855-62.
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Thomassin, H., C. Kress and T. Grange (2004). "MethylQuant: a sensitive method for quantifying methylation of specific cytosines within the genome." Nucleic Acids Res 32(21).
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Pâques F. and T. Grange (2002). Architecture nucléaire et régulation transcriptionnelle chez les eucaryotes supérieurs. Med./Sci 18, 1245-1256.
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Grange, T. (2001). Traduction nucléaire : un garde-fou contre les protéines tronquées ?
Med./Sci. 17, 914-915.
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Grange, T., L. Cappabianca, M. Flavin, H. Sassi and H. Thomassin (2001). "In vivo analysis of the model tyrosine aminotransferase gene reveals multiple sequential steps in glucocorticoid receptor action." Oncogene 20(24): 3028-38.
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Kress, C., H. Thomassin and T. Grange (2001). "Local DNA demethylation in vertebrates: how could it be performed and targeted'" FEBS Lett 494(3): 135-40.
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Thomassin, H., M. Flavin, M. L. Espinas and T. Grange (2001). "Glucocorticoid-induced DNA demethylation and gene memory during development." Embo J 20(8): 1974-83.
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Cappabianca, L., H. Thomassin, R. Pictet and T. Grange (1999). "Genomic footprinting using nucleases." Methods Mol Biol 119: 427-42.
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Christoffels, V. M., H. Sassi, J. M. Ruijter, A. F. Moorman, T. Grange and W. H. Lamers (1999). "A mechanistic model for the development and maintenance of portocentral gradients in gene expression in the liver." Hepatology 29(4): 1180-92.
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Grange T. and H. Thomassin (1999). « Comment déméthyler une cytosine? Enlève-t-on un peu, beaucoup, encore plus, ou pas du tout' » Med./Sci., 15, 907-908.
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Thomassin, H., E. J. Oakeley and T. Grange (1999). "Identification of 5-methylcytosine in complex genomes." Methods 19(3): 465-75.
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Christoffels, V. M., T. Grange, K. H. Kaestner, T. J. Cole, G. J. Darlington, C. M. Croniger and W. H. Lamers (1998). "Glucocorticoid receptor, C/EBP, HNF3, and protein kinase A coordinately activate the glucocorticoid response unit of the carbamoylphosphate synthetase I gene." Mol Cell Biol 18(11): 6305-15.
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Sassi, H., R. Pictet and T. Grange (1998). "Glucocorticoids are insufficient for neonatal gene induction in the liver." Proc Natl Acad Sci U S A 95(10): 5621-5.
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Bertrand, E., D. Castanotto, C. Zhou, C. Carbonnelle, N. S. Lee, P. Good, S. Chatterjee, T. Grange, R. Pictet, D. Kohn, D. Engelke and J. J. Rossi (1997). "The expression cassette determines the functional activity of ribozymes in mammalian cells by controlling their intracellular localization." Rna 3(1): 75-88.
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Bertrand, E., M. Fromont-Racine, R. Pictet and T. Grange (1997). "Detection of ribozyme cleavage products using reverse ligation-mediated PCR (RL-PCR)." Methods Mol Biol 74: 311-23.
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Couttet, P., M. Fromont-Racine, D. Steel, R. Pictet and T. Grange (1997). "Messenger RNA deadenylylation precedes decapping in mammalian cells." Proc Natl Acad Sci U S A 94(11): 5628-33.
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Grange T., G. Rigaud, E. Bertrand, M. Fromont-Racine, M.-L. Espinás, J. Roux and R. Pictet (1997). “In vivo footprinting of the interaction of proteins with DNA and RNA.” in In vivo footprinting. Cartwright, I. L. Ed. Advances in Molecular and Cell Biology. JAI Press, Inc., Greenwich, Conn. 21, 73-109.
Grange, T., E. Bertrand, M. L. Espinas, M. Fromont-Racine, G. Rigaud, J. Roux and R. Pictet (1997). "In vivo footprinting of the interaction of proteins with DNA and RNA." Methods 11(2): 151-63.
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Espinas, M. L., J. Roux, R. Pictet and T. Grange (1995). "Glucocorticoids and protein kinase A coordinately modulate transcription factor recruitment at a glucocorticoid-responsive unit." Mol Cell Biol 15(10): 5346-54.
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Roux, J., R. Pictet and T. Grange (1995). "Hepatocyte nuclear factor 3 determines the amplitude of the glucocorticoid response of the rat tyrosine aminotransferase gene." DNA Cell Biol 14(5): 385-96.
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Sassi, H., M. Fromont-Racine, T. Grange and R. Pictet (1995). "Tissue specificity of a glucocorticoid-dependent enhancer in transgenic mice." Proc Natl Acad Sci U S A 92(16): 7197-201.
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Bertrand, E., R. Pictet and T. Grange (1994). "Can hammerhead ribozymes be efficient tools to inactivate gene function?" Nucleic Acids Res 22(3): 293-300.
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Espinas, M. L., J. Roux, J. Ghysdael, R. Pictet and T. Grange (1994). "Participation of Ets transcription factors in the glucocorticoid response of the rat tyrosine aminotransferase gene." Mol Cell Biol 14(6): 4116-25.
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Schweizer-Groyer, G., A. Groyer, F. Cadepond, T. Grange, E. E. Baulieu and R. Pictet (1994). "Expression from the tyrosine aminotransferase promoter (nt -350 to 1) is liver-specific and dependent on the binding of both liver-enriched and ubiquitous trans-acting factors." Nucleic Acids Res 22(9): 1583-92.
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Bertrand, E., M. Fromont-Racine, R. Pictet and T. Grange (1993). "Visualization of the interaction of a regulatory protein with RNA in vivo." Proc Natl Acad Sci U S A 90(8): 3496-500.
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Fromont-Racine, M., E. Bertrand, R. Pictet and T. Grange (1993). "A highly sensitive method for mapping the 5' termini of mRNAs." Nucleic Acids Res 21(7): 1683-4.
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Bertrand E., T. Grange and R. Pictet (1992). “Trans-acting hammerhead ribozymes in vivo: present limits and future directions.” in Gene regulation by antisense RNA and DNA. pp 71-81. R.P. Erickson & J. Izart Eds. Keistone Symposia series on Molecular and Cellular Biology. Raven Press, Ltd., New York.
Schweizer-Groyer, G., A. Groyer, F. Cadepond, T. Grange, E. E. Baulieu and R. Pictet (1992). "Two liver-enriched trans-acting factors support the tissue-specific basal transcription from the rat tyrosine aminotransferase promoter." J Steroid Biochem Mol Biol 41(3-8): 747-52.
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Grange, T., J. Roux, G. Rigaud and R. Pictet (1991). "Cell-type specific activity of two glucocorticoid responsive units of rat tyrosine aminotransferase gene is associated with multiple binding sites for C/EBP and a novel liver-specific nuclear factor." Nucleic Acids Res 19(1): 131-9.
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Rigaud, G., T. Grange and R. Pictet (1991). "Sequenase should be used instead of the Klenow fragment for the synthesis of oligonucleotides labeled to a high specific activity." Nucleic Acids Res 19(17): 4777.
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Rigaud, G., J. Roux, R. Pictet and T. Grange (1991). "In vivo footprinting of rat TAT gene: dynamic interplay between the glucocorticoid receptor and a liver-specific factor." Cell 67(5): 977-86.
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Grange, T., J. Roux, M. Fromont-Racine and R. Pictet (1989). "Positive and negative regulation of a transfected chimeric tyrosine aminotransferase gene: effect of copy number." Exp Cell Res 180(1): 220-33.
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Grange, T., J. Roux, G. Rigaud and R. Pictet (1989). "Two remote glucocorticoid responsive units interact cooperatively to promote glucocorticoid induction of rat tyrosine aminotransferase gene expression." Nucleic Acids Res 17(21): 8695-709.
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Oddos, J., T. Grange, K. D. Carr, B. Matthews, J. Roux, H. Richard-Foy and R. Pictet (1989). "Nucleotide sequence of 10 kilobases of rat tyrosine aminotransferase gene 5' flanking region." Nucleic Acids Res 17(21): 8877-8.
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Grange, T., C. M. de Sa, J. Oddos and R. Pictet (1987). "Human mRNA polyadenylate binding protein: evolutionary conservation of a nucleic acid binding motif." Nucleic Acids Res 15(12): 4771-87.
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Rigaud, G., T. Grange and R. Pictet (1987). "The use of NaOH as transfer solution of DNA onto nylon membrane decreases the hybridization efficiency." Nucleic Acids Res 15(2): 857.
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Grange, T., M. Bouloy and M. Girard (1985). "Stable secondary structures at the 3'-end of the genome of yellow fever virus (17 D vaccine strain)." FEBS Lett 188(1): 159-63.
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Grange, T., C. Guenet, J. B. Dietrich, S. Chasserot, M. Fromont, N. Befort, J. Jami, G. Beck and R. Pictet (1985). "Complete complementary DNA of rat tyrosine aminotransferase messenger RNA. Deduction of the primary structure of the enzyme." J Mol Biol 184(2): 347-50.
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Grange, T., F. Kunst, J. Thillet, B. Ribadeau-Dumas, S. Mousseron, A. Hung, J. Jami and R. Pictet (1984). "Expression of the mouse dihydrofolate reductase cDNA in B. subtilis: a system to select mutant cDNAs coding for methotrexate resistant enzymes." Nucleic Acids Res 12(8): 3585-601.
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Publications Eva-Maria Geigl
Pruvost, M., Bessa Correia, V., Braguier, S., Morel, N., Fernandez-Jalvo, Y., Grange, T. and Geigl, E.-M. "Amplification of DNA from fossil bones – Fresh is best ! ". Journal of Archaeological Science, sous presse
Geigl, E.-M. (2005) "A personal analysis of the high failure rate of ancient DNA research." Geoarchaeological and Bioarchaeological Studies, Volume 3, p. 463-466.
Pruvost, M., Grange, T., and Geigl, E.-M. (2005) "Minimizing DNA-contamination by using UNG-coupled quantitative real-time PCR (UQPCR) on degraded DNA samples : application to ancient DNA studies. " Biotechniques 38 :569-575.
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Geigl, E.-M. (2005) "Why ancient DNA research needs taphonomy ». In « Biosphere to Lithosphere : new studies in vertebrate taphonomy" T.O'Connor (ed)., Oxbow Books., p. 79-86,
Geigl, E.-M. and Pruvost, M. (2004) "Plea for a multidisciplinary approach to the study of Neolithic migrations : the analysis of biological witnesses and the input of palaeogenetics." In « Colonisation,, Migration, and Marginal Areas. A Zooarchaeological Approach. » M. Mondini, S. Munoz and S. Wickler (eds), Oxbow Books, p. 10-19.
Geigl, E.-M., Baumer, U., and Koller, J. (2004) "New Appproaches to the study of the preservation of biopolymers in fossil bones. Environ. Chem. Letters 2(1) :45-48.
Pruvost, M. and Geigl, E.-M. (2004) “Real-time Quantitative PCR to Assess the Authenticity of Ancient DNA”, Journal of Archaeological Science, 31(9):1191-1197
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Geigl, E.-M. (2002) "On the Circumstances Surrounding the Preservation and Analysis of Very Old DNA. " Archaeometry 44 (3) :337-342.
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Geigl, E.-M. (2001) "Inadequate Use of Molecular Hybridization to Analyze DNA in Neanderthal Fossils", Am. J. Hum. Genetics 68:287-290.
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Geigl, E.-M. (1997) "L'émergence de la paléogénétique". Biofutur 164:28-34.
Dernière modification 14/03/2011